Mentoring

a
PhD supervision:

  1. David Calhas, IST 80980, EEG to fMRI Synthesis [concluded]
  2. Diogo Soares, FCUL (supervised by Sara C. Madeira), Triclustering: Tackling Challenges of Temporality and Heterogeinity for Effective Solutions in Biomedicine [concluded]
  3. João Aparício, IST 97155 (co-supervised by Francisco Santos and Elisabete Arsénio), Knowledge acquisition from dynamic multi-layered networks
  4. Leonardo Alexandre, IST 94054 (co-supervised by Rafael Costa), Descriptive and predictive markers from annotated tensor data
  5. Miguel Garção Silva, FCUL (co-supervised by Sara C. Madeira), Modeling actionable spatiotemporal dynamics from heterogeneous urban data
  6. Daniel Gonçalves, IST 94007 (co-supervised by Rafael Costa), Glycoproteogenomics in colorectal cancer using deep learning approaches
  7. André Patrício, IST 87631 (co-supervised by Rafael S. Costa), Multi-omics pattern discovery in systems oncology
  8. Sofia Cerqueira, IST 81200 (co-supervised by José Barateiro and Elisabete Arsénio), Artificial intelligent solutions to aid transportation and civil engineering
  9. Leonor Pimenta, IST 81155 (supervised by Vasco Manquinho), Anomoulous and emerging pattern discovery from spatiotemporal urban data
  10. Rita Moura Alexandre, NOVA Medical School (supervised by Isabel Fragata and Ray Dolan), Digital cognitive markers for early intervention in memory decline
  11. Han Shao, NTNU (supervised by Elisabetta Tedeschi and Hugo Morais), Real-time analytics on high fidelity synchronized measurements

Successfully concluded MSc thesis supervisions:

  1. José Mota, 81726, Mining temporal patterns from multivariate time series data to aid the classification of dementia profiles
  2. Francisco Neves, 83467 (co-supervised by Anna Finamore), Discovery of actionable patterns in road traffic [Awarded Best Thesis by ULisboa-RedeMov 2021]
  3. Pedro Lindeza, 80831, Learning from heterogeneous data with block-wise missings to aid psychiatric diagnoses
  4. Pavlo Kovalchuck, 81440 (co-supervised by Prof. Diogo Proença), Unsupervised concept analysis in legal documents
  5. David Calhas, 80980, Schizophrenia diagnosis from electroencephalography with contrastive learning
  6. Pedro Rodrigues, 87696 (co-supervised by Rafael Costa), Local transcriptomic patterns of regulatory response to infection by SARS-CoV-2
  7. Daniel Gonçalves, 94007 (co-supervised by Rafael Costa), Clinical prognosis and risk prediction of postoperative complications in cancer patients
  8. Margarida Costa, 83425 (co-supervised by Susana Vinga), Unsupervised anomaly detection in water systems using recurrent neural networks
  9. Inês Leite, 81328 (co-supervised by Prof. Anna Finamore), Contextual outlier detection in traffic data
  10. José Diogo Castro, 84401 (co-supervised by Pedro Monteiro), Modeling of blood activity in Portugal to support sourcing and campaign decisions
  11. Francisco Barata, 87656, Spatiotemporal patterns of emergency prevalence and response in Portugal
  12. Mariana Brejo, 89501 (supervised by Pedro Monteiro), Spatiotemporal patterns of blood donation and demand in Portugal
  13. Cláudio Sardinha, 94082 (co-supervised by Anna Finamore), Describing and predicting demand in Lisbon’s public Bike sharing system
  14. Susana Gomes, 94043 (co-supervised by Susana Vinga), Modeling of water distribution network dynamics using multivariate time series data
  15. Carlos Lemonde Macedo, 73919 (co-supervised by Elisabete Arsénio), Multimodal analysis of transport in the city of Lisbon
  16. Sofia Cerqueira, 81200 (co-supervised by Elisabete Arsénio), End-to-end traffic flow analysis of public transport data in the city of Lisbon
  17. Ricardo Sousa, 94046 (co-supervised by Conceição Amado), Autonomous time series data processing on historical and real-time settings
  18. Mariana Carrasco, 86594 (co-supervised by António Rito Silva), Detecting student collusion in online test environments from answer agreement
  19. Rodrigo Graça, 81402 (co-supervised by Diogo Ferreira), Are national hospitals suitably funded according to activity, quality, access and expenses?
  20. Leonardo Alexandre, 94054 (co-supervised by Rafael Costa), Discriminative pattern mining in oncological data to understand surgical risk factors
  21. Rui Nóbrega, 87703 (supervised by Diana Prata), Neuroimage consolidation from a grid of hospitals to externally validate predictors
  22. João Palet (co-supervised by Vasco Manquinho), 87656, Context-based predictive models for medical emergencies
  23. João Aparício, 97155 (co-supervised by Elisabete Arsénio), Modeling and assessing resilience in multimodal transportation systems [Awarded Best Thesis by ULisboa-RedeMov 2022]
  24. Vasco Silva, 86525 (co-supervised by Anna Finamore), Optimizing bus networks from multimodal travel flows
  25. André Patrício, 87631 (co-supervised by Rafael S. Costa), Differential regulatory response of Hodgkin’s Lymphoma according to PET result
  26. Pedro Caldeira, 81888 (co-supervised by António Rito Silva), Fraud detection in multiple choice exams from question answer times
  27. Eduardo Machado, 97133, Chatbot decision support in adaptive, domain-guided, and sentiment-rich settings
  28. Miguel Moreira, 95643 (co-supervised by Guilherme Ramos), Mapping the Spatial Distribution of Neurotransmission Markers using Postmortem Cohorts
  29. David Belchior, 95550 (co-supervised by Luís Madeira), Inappropriate prescription of psychotropic drugs from PEM: tackling challenges of polypharmacy and dependence
  30. Alexandra Pestana Rodrigues, 95528 (co-supervised by Daniel Faria), Predicting Transcriptional Signatures in the Brain from Molecular Screens Of Peripheral Tissues
  31. Miguel Dauphinet Barros, 102184 (co-supervised by Pedro Monteiro), Context-aware forecasting of blood donation and demand for efficient nationwide management of blood products

Other concluded supervisions:

  1. Anna Finamore, 68340 (PosDoc), Generative models for descriptive and predictive urban data analytics
  2. Thomas James Tiam-Lee, 10844 (PosDoc), Spatiotemporal data mining for knowledge extraction in urban data domains
  3. Marta Bubicz, 82297 (PosDoc), Resilient and sustainable (environmentally and socially) transport systems in the post-pandemic era
  4. João Matos Rei, 100328 (co-supervised by Hugo Terças and Pedro Cosme), Describing chaos dynamics in cold atoms using Artificial Intelligence
  5. Margarida Clemêncio Loureiro, 103732, Pedictive value of different peripheral tissues to estimate transcriptomic markers in the brain
  6. Duarte Fernandes, 102723 (co-supervised by David Calhas), Graph neural network learning for knowledge-supported prediction of neuromarkers
  7. Ana Santos, 84364, Associative study between GIRA bicycle sharing demand and the spatial and weather context sources
  8. Duarte Ghira, 96372, Representation learning of full electronic medical health records at LUZ hospital/li>
  9. Joana Coutinho, 87666, Spatiotemporal indices to capture vulnerabilities in INEM’s response to medical emergencies
  10. Catarina Marques, 100465, Dimensioning interaction risks in nationally co-prescribed psychotropic drugs
  11. Tomás Reis Venda, 103139, Multi-task learning of neurotranscriptomic targets involved in the regulation of neurotransmission systems
  12. Athilesh Arputham and Anirudh Arputham, A comprehensive and pedagogic survey on open source tools for user-friendly time series data analysis

Ongoing MSc thesis:

  1. Maria Beatriz Fernandes, 93298 (co-supervised by Thomas Distler), High-throughput in-silico characterization of 3D astrocyte-neuron cell cultures
  2. Jessica Ramgi, 75619, Discriminative brain signal patterning in psychosis
  3. Bernardo Cordeiro, 78778 (co-supervised by Alexandre Francisco), Integrative markers to support neurodegenerative disease prognostic
  4. Henrique Duarte Anjos, 99081 (co-supervised Rafael Costa) ECG-informed prediction of structural heart disease risk at primary care level using a large Portuguese cohort
  5. João Bernardo Rodrigues, 100326 (co-supervised by Hugo Terças), Descriptive and Predictive Modeling of Chaos in Cold Atom Physics using Explainable Deep Learning
  6. José Pedro Antunes, 96260 (co-supervised by Elisabete Arsénio) Data-centric models for the sustainable development of the multimodal Sines-Madrid transport corridor
  7. Rodrigo Marramaque, 105799 (supervised by António Andrade), Designing urban mobility networks: a case study in Lisbon Metropolitan Area
  8. David Mello, 89196 (co-supervised by Rafael S. Costa), Actionable Pattern Discovery in Proteomic Data
  9. Phillipe Simões, Univ. Coimbra (supervised by Pedro Abreu), Analysis in Breast Cancer Patients with Brain Metastasis
  10. Francisca Leite, 38293 (co-supervised by José Moreira), Exploring the Impact of Future Self-Perception on Healthcare Decision-Making
-->