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MATRIX USED | BLOSUM50 | BLOSUM40 | PAM250 | |||||||||||
NORMALIZATION | W | DIAG(W) | 2^W | e.^W | Neg->0 | (W-min)/range | W | e.^W | Neg->0 | (W-min) /range | W | e.^W | Neg->0 | (W-min)/range |
fa | 0.75 | 0.73 | 0.67 | 0.64 | 0.74 | 0.75 | 0.75 | 0.64 | 0.74 | 0.75 | 0.75 | 0.64 | 0.74 | 0.75 |
sf | 0.67 | 0.66 | 0.61 | 0.59 | 0.67 | 0.67 | 0.67 | 0.59 | 0.67 | 0.67 | 0.67 | 0.59 | 0.67 | 0.67 |
cf | 0.61 | 0.61 | 0.57 | 0.55 | 0.61 | 0.61 | 0.61 | 0.55 | 0.61 | 0.61 | 0.61 | 0.55 | 0.61 | 0.61 |
cl | 0.56 | 0.56 | 0.52 | 0.51 | 0.56 | 0.56 | 0.56 | 0.51 | 0.56 | 0.56 | 0.56 | 0.51 | 0.56 | 0.56 |
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