Additional material and results to paper:
1 Biomathematics Group, ITQB – Univ. Nova Lisboa, R.Qta. Grande, 2780-156 Oeiras, PORTUGAL.
2*Dept Biometry & Epidemiology, Medical Univ. South Carolina, 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA.
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MATLAB files with sequences PDB40b.mat and PDB40v.mat.
Go to ASTRAL webpage for PDB40-B
set (release 1.61). Check older versions of SCOP database, including PDB40
(release 1.35) in [Brenner et al, 1998]. For additional code
contact the authors.
Briefly recall definitions of distance
functions used.
PDB40-v | PDB40-b | OBS. |
---|---|---|
ROC curves, four levels, all metrics |
ROC curves, four levels, all metrics |
Figures 2 and 3 |
AUC values |
AUC values |
Figures 4 and 5 |
Table with AUC values |
|
W-metric AUC values for PDB40-b dataset, using other scoring matrices and normalization procedures.
AUC values for 2 and 3-tuples
PDB40-v | PDB40-b |
---|---|
SW vs. W-metric |
SW vs. W-metric |
SW vs. Std. Euclidean |
SW vs. Std. Euclidean |
Copy-friendly Table with AUC values for all the metrics |
[ SCOP db ] [ ASTRAL ] [ PDB ] [ Alignment-free review ]
Suggestions &Comments: svinga@itqb.unl.pt
Created: 2003 Mar 18 -- Last update: 2004 Mar 25
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