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MATRIX USED BLOSUM50 BLOSUM40 PAM250
NORMALIZATION W DIAG(W) 2^W e.^W Neg->0 (W-min)/range W e.^W Neg->0 (W-min) /range W e.^W Neg->0 (W-min)/range
fa 0.75 0.73 0.67 0.64 0.74 0.75 0.75 0.64 0.74 0.75 0.75 0.64 0.74 0.75
sf 0.67 0.66 0.61 0.59 0.67 0.67 0.67 0.59 0.67 0.67 0.67 0.59 0.67 0.67
cf 0.61 0.61 0.57 0.55 0.61 0.61 0.61 0.55 0.61 0.61 0.61 0.55 0.61 0.61
cl 0.56 0.56 0.52 0.51 0.56 0.56 0.56 0.51 0.56 0.56 0.56 0.51 0.56 0.56

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